Personal Finance for PhDs

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Emily

The Complete Guide to Quarterly Estimated Tax for Fellowship Recipients

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If you’re reading this article, you’ve already done the hard part: You know (or suspect) that you’re supposed to pay quarterly estimated tax on your fellowship using Form 1040-ES. Whether you’re a graduate student, a postdoc, a postbac, or some other kind of fellow or trainee, if you’re not having tax withheld from your income, it’s pretty likely that you have the responsibility of paying quarterly estimated tax. The main obstacle to PhD students and postdocs paying quarterly estimated tax is simply awareness! The process itself is not complicated or difficult, as I’ll show you in this complete guide to quarterly estimated tax for fellows.

complete guide quarterly estimated tax

If you’re still unsure that you owe income tax at all on your fellowship income—or you want to help your peers understand this issue as well—I have plenty of articles and podcast episodes on that topic in particular.

Further reading and listening:

This article is for US citizens, permanent residents, and resident aliens living and working in the US, and I’ve made the assumption that you are not, in addition to being a fellow, a farmer, fisherman, or business owner/self-employed, that you do not have any household employees, and that your adjusted gross income is less than $150,000. (There are additional factors at play for these groups with respect to calculated estimated tax due.)

This post is for educational purposes only and does not constitute tax, legal, or financial advice.

This post was most recently updated on 3/21/2024.

Table of Contents

This article is an overview of how to handle estimated tax as a fellowship recipient. For an in-depth, line-by-line exploration of the Estimated Tax Worksheet in Form 1040-ES that addresses the common scenarios fellowship recipients face, please consider joining my tax workshop. It comprises pre-recorded videos, a spreadsheet, and quarterly live Q&A calls with me.

Click here to learn more about the quarterly estimated tax workshop for fellows.

What Is Estimated Tax?

The IRS expects to receive tax payments from you throughout the year, not just in the spring when you file your tax return.

To that end, employers offer automatic tax withholding to their employees. The employee files Form W-4 with the employer. This form helps the employee perform a high-level calculation about the amount of income tax the employee will owe for the year, which tells the employer approximately how much income tax to withhold from each paycheck. (Non-student employees will also have FICA tax withheld.)

Non-employees are almost never extended the courtesy of automatic income tax withholding by their university/institution/funding agency. (Income tax withholding for fellowship/training grant recipients is offered in rare cases—Duke University is one, at least while I was there—so it is worth inquiring about, but don’t be surprised if the answer is no.) Instead, the onus is on the individual to manually make tax payments.

By the time a person/household files a tax return in the spring of each year, the IRS expects the tax paid throughout the year to be in excess of or only slightly less than the actual amount owed. Approximately 3 in 4 Americans receive a tax refund (the amount of tax paid throughout the year minus the actual amount owed) after filing their tax returns. The rest, presumably, owe some additional tax when they file their tax returns. If the amount of additional tax due (above the amount paid throughout the year) is too high, the IRS will penalize the taxpayer.

To help taxpayers avoid underpaying tax throughout the year and being penalized, the IRS has set up a method of making manual tax payments four times per year: quarterly estimated tax payments. Anyone whose primary income isn’t subject to automatic withholding (e.g., fellowship recipients, self-employed people) or who has significant income in addition to their employee income (e.g., investment income) should look into making quarterly estimated tax payments.

Who Has to Pay Estimated Tax?

In general, you should expect to pay income tax in the year you receive your fellowship unless:

  • Your income is particularly low (e.g., you had an income for only part of the year or your fellowship went toward qualified education expenses instead of your personal living expenses) or
  • Your tax deductions and/or credits are particularly high.

Your tax due for the year might be large enough that you are required to make quarterly estimated tax payments or small enough that you can skip the quarterly payments and pay all the tax due at once with your annual tax return.

The dividing line is $1,000 of tax due at the end of the year in addition to the tax you had withheld and your refundable credits. If you expect to owe more than $1,000 in additional tax for the year, you should make quarterly tax payments, unless you fall into one of the exception categories discussed in the next section. If you expect to owe less than $1,000 in additional tax, you don’t have to make those quarterly payments and will just pay everything you owe with your annual tax return.

For individuals who receive only fellowship income not subject to tax withholding throughout the calendar year, the calculation is straightforward: How much income tax will you owe for the year, greater or less than $1,000?

For individuals/households with fellowship income not subject to withholding plus employee income subject to withholding (e.g., one person with part-year fellowship income and part-year employee income, one spouse with fellowship income and one spouse with employee income), both the total amount of tax owed across all incomes and the amount withheld must be taken into consideration. If you will owe more than $1,000 in additional tax at the end of the year and don’t fall into an exception category, you should file quarterly estimated tax.

Having a combination of fellowship and employee income is very common for PhD trainees, especially if they are married. My tax workshop addresses how to handle this particular scenario in detail.

Click here to learn more about the estimated tax workshop.

Who Doesn’t Have to Pay Estimated Tax?

Some people who owe more than $1,000 in additional tax at the end of the year are not required to make quarterly estimated tax payments.

  1. If you had zero tax liability in the previous tax year, you are not required to make quarterly estimated tax payments in the current tax year. For example, if last year you were a undergrad or grad student with a low enough income that you didn’t pay any income tax, you’re not required to make quarterly estimated tax payments this year. Please note this refers to your overall tax liability for the year, not whether you had to make a payment when you filed your return.
  2. If the sum of your tax withholding throughout the year and refundable credits equals or exceeds 90% of the tax you expect to owe this year, you are not required to make quarterly estimated tax payments. For example, if your spouse earns the lion’s share of your household income and has a generous amount of tax withheld automatically, your household’s overall tax withholding might be sufficient to exempt you from making quarterly estimated tax payments on your fellowship.
  3. If the sum of your tax withholding throughout the year and refundable credits equals or exceeds 100% of the tax you owed last year, you are not required to make quarterly estimated tax payments. For example, if last year you finished undergrad and started grad school with a stipend, your tax owed for the year was likely quite small. If you have assistantship pay with tax withholding for part of this year and then switch to a fellowship with no withholding, your tax withholding from your assistantship might cover 100% of your tax owed from last year, and you wouldn’t be required to make quarterly estimated tax payments.

The best way to estimate your tax due this year along with your withholding and refundable credits and determine whether you are required to pay quarterly estimated tax is to fill out Form 1040-ES.

Psssst… Want to take a shortcut? If you have no interest in filling out Form 1040-ES’s Estimated Tax Worksheet, join my tax workshop. I explain a shortcut method to make sure you pay enough in estimated tax to avoid a fine without having to complete an advance draft your tax return this year. This method will only take a few minutes!

Click here to learn more about the quarterly estimated tax workshop for fellows.

Fill Out the Estimated Tax Worksheet in Form 1040-ES

Form 1040-ES, specifically the Estimated Tax Worksheet (p. 8), guides you through 1) estimating the amount of tax you will owe for the year, 2) determining if you are required to make quarterly estimated tax payments, and 3) calculating the amount of your required estimated tax payment.

I’ll point out a simple approach to filling out the Estimated Tax Worksheet for individual taxpayers/households with only fellowship and employee income. If you additionally have self-employment income or other types of income, your approach will be more nuanced.

If your fellowship income is disbursed frequently throughout the year (e.g., once per month for the entire year), this simple method will work for you. If your fellowship income is disbursed infrequently (e.g., 1-3 times per year) or throughout only part of the year (e.g., only the fall term after switching funding sources), keep reading for an alternative method.

The important numbers a fellowship recipient needs to plug in to Form 1040-ES to fill it out are:

  • Line 1: Your expected Adjusted Gross Income (AGI), which is your total income for the year less your above-the-line deductions (e.g., deductible portion of student loan interest paid, traditional IRA contributions). Your AGI includes your fellowship income, taxable scholarship income (if applicable), and any wages you (and your spouse) received, e.g., from an assistantship.
  • Line 2: Your deductions. If you plan to itemize your deductions, you should enter the total of those itemized deductions in line 2a; otherwise, enter the amount of your standard deduction (in 2024: single $14,600, married filing jointly $29,200).
  • Line 7: The sum of your credits if you plan to take any. Examples of credits include the Lifetime Learning Credit, the Child Tax Credit, and the Child and Dependent Care Credit.
  • Line 11b: The sum of your refundable credits if you plan to take any, such as the Earned Income Credit or the Additional Child Tax Credit.
  • Line 12b: Your total tax liability for the prior year.
  • Line 13: Income tax you expect to be withheld throughout the year. This can generally be extrapolated from your most recent pay stub.

If you come to the worksheet with this set of numbers, all you need to complete it is to follow the arithmetic steps instructed in the form and to look up your tax due using the Tax Rate Schedule on p. 7.

Once you fill out the worksheet, line 11c will tell you the total amount of tax that it is estimated you will have to pay for the year. The rest of the form helps you determine the minimum amount of quarterly estimated tax you have to pay to avoid a penalty, which might be $0. Both of these numbers are key for your tax planning for the year; don’t just make the minimum payments necessary and forget that you might owe additional tax along with you tax return in the spring.

Are you curious about the rest of the lines in the Estimated Tax Worksheet and wondering if you need to fill them out? My workshop devotes a module to explaining each line so you can determine if they apply to you or not.

Click here to learn more about the estimated tax workshop.

Method for Irregular Income

If you receive your income unevenly throughout the year, the IRS has a method for calculating a different amount of estimated tax due in each quarter, the Annualized Income Installment Method (see Publication 505).

Essentially, you calculate your tax due for each quarter based on your cumulative income up to that point of the year. Ultimately, you can pay the lesser of the estimated tax calculated through this worksheet or the quarterly estimated tax calculated from the previous method. (This is helpful if your income is higher later in the year than earlier; you don’t have to pay the extra tax until you actually receive the income.)

If you receive your fellowship income irregularly throughout the year—particularly if you are paid more later in the year than earlier—and want to be very exact about the amount of estimated tax you pay each quarter, you should fill out the Annualized Income Installment Method Worksheet after you complete the Estimated Tax Worksheet.

However, the Annualized Income Installment Method is a very complicated and fiddly worksheet, so if you don’t mind just making the regular quarterly payments, perhaps with guesstimate adjustments, that’s going to be faster and easier. For example, if you have tax withholding in place for much of the year through your assistantship but switch to fellowship funding for just the fall semester, your estimated tax payments all need to be made in the last one or two quarters, not the earlier part when you were having tax withheld.

Join my tax workshop for more details on how to handle quarterly estimated tax when you switch on or off of fellowship mid-year, a common scenario for fellowship recipients.

Click here to learn more about the estimated tax workshop.

Paying Your Quarterly Estimated Tax

If you are required to pay quarterly estimated tax, you have many options for doing so, such as by mail, over the phone, and through the IRS2Go app. The easiest method is most likely through the website IRS.gov/payments, where you can choose to make a direct transfer from your checking account for free or to pay using a debit or credit card for a fee.

The due dates for your 2024 quarterly estimated tax are:

  • Q1: April 15, 2024
  • Q2: June 17, 2024
  • Q3: Sept 16, 2024
  • Q4: Jan 15, 2025 (or Jan 31, 2025 if you file your annual tax return by that date)

Please note that these dates are not at 3-month intervals. Quarter 1 is three months long; quarter 2 is two months long; quarter 3 is three months long; quarter 4 is four months long.

Penalties for Underpaying Tax throughout the Year

There are penalties for failing to make estimated tax payments when you are required to do so or underpaying your estimated tax. The penalty is calculated separately for each quarter, so you may be penalized for underpaying in an earlier quarter even if you made up for it in a later quarter. The details about the penalties can be found in Publication 505.

State Quarterly Estimated Tax

Your state and/or local government may also require you to make estimated tax payments.

Set Up a System of Self-Withholding

If you are going to owe any income tax for the year and do not have automatic income tax withholding set up, you should intentionally prepare for your tax bill, whether or not that tax is due with your annual tax return or quarterly.

My recommendation is to set up a separate savings account labeled “Income Tax” or similar. With every paycheck you receive, transfer into your savings account the amount of money from it that you expect to pay in income tax. For example, if you receive monthly fellowship paychecks, you should set aside 1/12th of the amount you calculated in Line 11c (rounding up). When you pay tax quarterly or annually, draw the payment from that dedicated savings account.

For more details about how to set up this kind of system and save in advance for each of your tax deadlines, join my tax workshop.

Click here to learn more about the estimated tax workshop.

How to Avoid Paying Estimated Tax Using Your Spouse’s Withholding

If you are married filing jointly with one spouse receiving a fellowship not subject to withholding and one spouse subject to automatic withholding, it is possible to set up the withholding on the employee income so that you don’t have to pay quarterly estimated tax on the fellowship.

The idea is that you will increase the automatic withholding on the employee’s income so that it covers what you owe in tax for the year as a couple. This involves filing a new Form W-4 with your spouse’s employer.

The simplest way to make this change is to enter an additional amount of money on Form W-4 Line 4c to have withheld from each paycheck (Form 1040-ES Line 11c divided by the number of paychecks your spouse receives per year).

How To Launch A Side Hustle in Grad School

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Side hustles are all the rage these days. Everyone seems to have one, and some even translate into big money! However, in my experience, few grad students are aware of (or understand how) to get one going. Even fewer faculty seem to be aware of how they could have one themselves OR how they can support their students in this endeavor. In this post, I’m going to talk to you about why you want to launch a side hustle, and why it’s worth your time to do it in grad school. If your a faculty member these tips can also apply to you!

Today’s article on how to launch a side hustle is by Dr. Leigh A. Hall. To read an article today by Emily, please visit Leigh’s website, Teaching Academia.

launch side hustle

What Is A Side Hustle?

A side hustle is a way to earn extra cash. Ideally, it’s going to be something you are super passionate about because you will be spending extra time creating it. Side hustles happen outside your current full time job (or graduate studies/assistantship). You decide how much time you want to devote to it and when you want to put in the hours. You can work with someone else, but most side hustles tend to start out as solo ventures. As they become more successful, you may find you need to pay others to help you. Some people have such successful side hustles that they eventually leave their full time job and devote themselves solely to their project.

Why Should You Launch A Side Hustle?

You might be thinking you have enough to do right now. You don’t need to have extra demands on your time. And there’s no guarantee that a side hustle will pay off anyways, right? But think about it this way – if your side hustle is inline with things you already enjoy doing then you’re not wasting any time by devoting yourself to it. If you were going to do it anyways, then you lose nothing by seeing if you can generate some extra income by sharing your work with others.

However, the side hustle is not just about you. While it can be a great way to generate extra income, ultimately you are providing a service that benefits others. If people are willing to pay you for your work – whatever it may be – that means they find value in it which means you are enhancing the lives of others in some way.

Finally, a side hustle can allow you to establish yourself beyond your academic career. It will allow you to connect with more people, and different people, than you likely would through academia alone. This can bring you a whole host of opportunities and open doors that otherwise would have stayed close. Your work as an academic will likely reach a narrow subset of people. Add a side hustle to that and you can expand your reach.

How To Identify The Right Side Hustle For You

Ok – you’re interested but unsure about where to start. The first thing is to figure out what you want your side hustle to be about. It can be connected to your day job, but it doesn’t have to. If you have a hobby that you are exceptionally good at then you could turn that hobby into your side hustle. It doesn’t have to extend from your job.

For example, several years ago I ran a successful yoga blog. I’m not a yoga teacher. I just wrote about going to yoga classes and what I learned in the process about myself. Eventually the blog ran its course, but I was able to get some great sponsorships and support along the way.

Because my blog added value to the yoga community, companies would send me yoga mats, clothes, shoes, all kinds of goodies for review. I even got to review a meal kit service so I had groceries mostly paid for now and then. My yoga practice was a serious hobby, and it was able to generate some income for me – even if just through free products – that I enjoyed and benefited from.

Currently, my side hustle extends from my job. I have a number of courses I sell. Do I generate massive amounts of income? No, but I do enjoy a nice supplement that I can do with as I please (I often just save it).

The key here is to pick a niche that you enjoy and that you want to share with others. And it’s perfectly fine to have both a hobby and a professional side hustle! You get to set the hours and how much you will be involved so do what’s best for you.

Launching Your Side Hustle

There are a number of ways to launch your side hustle, and any combination of them can work. After you identify your niche, you’ll need to consider how you want to connect with others. Some common ways to do this are:

  1. A website. You can get one for free (wordpress.com) and later move to a paid version. A free version lets you test the waters and play around without the stress of having to pay for it.
  2. A YouTube channel: I highly recommend this. Everything is going in the direction of video. A channel will allow you to build an audience. And while you are giving people content for free, once they see that you have something of value they will start to buy your more in-depth products.
  3. Patreon: Admittedly, I need to get this one going. Patreon allows you to sell memberships at varying tiers. For example, you might have people who give you 5.00 every month in exchange for specific things you create or offer. A second tier of people might give you 10.00 a month and receive something different/more. You get to decide how to price the tiers and what people get in return.
  4. Selling Courses: You may want to create one or more courses that people can access asynchronously. A number of platforms allow for this with varying advantages and disadvantages. Udemy allows you to post your courses free of charge, but they will take a hefty fee in return (they also help with marketing your courses). Platforms like Teachable and Thinkific require you to pay an ongoing fee or yearly subscription for your courses to be hosted, and they do no marketing. However, you stand to keep more of your money each time you sell a course here than on Udemy.

Launching your side hustle thus requires:

  • A clear vision of what you are going to be offering
  • Who would be interested in your product/creations?
  • Understanding where to house yourself and your work

A side hustle is going to require a mix of free and paid content. You are going to want to have a website or YouTube Channel (likely both) and a plan in place for content development. What do you want to sell? When will you find time to create this content and build out your offerings (both free and paid).

If you’re wondering if there is a right/wrong/best time to launch your side hustle my answer to you is this:

There is no best time to launch. You need to know what it is you want to do and what platforms you want to start out on. Then you go. You don’t need to do everything at once, and you can build out along the way as you get comfortable. The trick is to not get caught up on something not being good enough or that you only need to do X and then everything will be perfect. We’re not looking for perfect here. We’re looking for a few key things to be in place and then it’s time to go.

Having a side hustle can bring in extra income while allowing you to grow and develop professionally or with a hobby. The sooner you get started the sooner you will start to reap the rewards.

Dr. Leigh A. Hall is a professor at the University of Wyoming where she holds the Wyoming Excellence Chair in Literacy Education. She’s had a side hustle for four years now selling courses that can benefit graduate students and early career academics. See her work at TeachingAcademia.com.

Where to Find Completely Free Help for Your Tax Return

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It’s incredible that in the US we are expected to prepare our own tax returns! Even a simple return can prove quite challenging for someone new to preparing one, so it’s natural to turn to other sources for help. Grad students have a double disadvantage in this area: 1) Their income and expenses are a bit unusual, so finding the right help can prove difficult. 2) They don’t have much available cash to pay for help. The good news is that there are numerous 100% free sources of help for your tax return.

This article was most recently updated on 1/17/2025. It is not tax, legal, or financial advice.

free tax help

The IRS

I think the IRS should be the first place you turn for help when preparing your tax return! After all, they have the final word on how to properly fill out a federal tax return. The IRS provides multiple sources of 100% free help.

Instructions

The central form of your tax return is Form 1040. (Non-residents will use a Form 1040-NR.) That is the one every filer will fill out. If you have a simple return, that’s where it stops, but if your return is more complex, you may have some additional schedules and forms to fill out.

Form 1040 comes with a detailed instruction booklet. If you’re ever confused about what the form means, just refer to that particular line in the instructions.

Interactive Tax Assistant

In addition to the PDF publications, the IRS has large set of tools known as the Interactive Tax Assistant. After selecting your question of interest (e.g., Do I Include My Scholarship, Fellowship, or Education Grant as Income on My Tax Return?), the ITA will prompt you for information and give you an answer at the end of the process.

Publications

Additionally, the IRS has instead created numerous publications to explain their interpretation of the code even more clearly.

The most relevant publications for PhDs are:

These publications are also frequently broken up and summarized into articles that are easily searched on the IRS website.

Free File

The IRS also provides free tax software for low-income individuals and households through its Free File system. If you have a household income below $84,000 per year, you can take advantage of it.

Direct File

For tax year 2024, the IRS is offering its free own tax software for residents of Alaska, Arizona, California, Connecticut, Florida, Idaho, Illinois, Kansas, Maine, Maryland, Massachusetts, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, Oregon, Pennsylvania, South Dakota, Tennessee, Texas, Washington, Wisconsin, and Wyoming who have simple tax returns.

Help Line

If you would rather wait on hold than sift through publications on your own, you can call the IRS Help Line during tax season. Sometimes a customer service agent can quickly answer your question and clear up your confusion.

Be warned that:

  • The hotline is available from 7am to 7pm “local time.” When I called in the past, local time was determine by my phone number’s area code, not the time zone where the call actually originated.
  • The customer service agents don’t have access to any special information. Everything they reference is already publicly available.

Other Tax Software

If you don’t qualify for the IRS Free File software, you may be able to use free versions of other software. Software like this prompts you for relevant information to assemble your tax return, so it’s an easy way to access professional tax advice. However, if your return becomes complex enough, you may be required to pay a fee to complete and submit it.

The Internet

There are plenty of non-IRS sources of tax help available online:

As with anything you find online, you have to take tax information with a grain of salt. Check the source and check their references. You are not receiving advice tailored to your situation, even if you’re listening to an expert.

Your University and/or Community

Your university and local civic organizations (e.g., libraries, community centers) may provide free tax help. It might even be tailored for students and/or low-income individuals. A number of universities have sponsored my tax return preparation workshop for their grad students and postdocs, and others ask local CPAs to volunteer their time.

One common program at universities and elsewhere is Volunteer Income Tax Assistance (VITA) for taxpayers earning less than $67,000 per year and others with particular needs. If you avail yourself of help from any of these sources, please be aware that the volunteers and even professionals may not be well-trained in the nuances of higher education income and expenses as relevant to PhD trainees.

Further reading: How to Work with a Tax Preparer when You Have Fellowship and/or Scholarship Income

When to Pay for Help

The great majority of tax information that you need to prepare your return is available to you for free. If you have the time and inclination, you could learn enough to put together a competent tax return. However, your time may be more valuable to you than the money you could spend getting more targeted and/or direct tax help. If your tax return is sufficiently complex (e.g., you own property, have investment income, are self-employed, etc.), it’s worthwhile to hire a professional tax preparer.

My tax return preparation workshop provides exactly the information grad students, postdocs, and postbacs need to prepare and understand their tax returns. It includes special scenarios, such as for dependents and students under the age of 24. The best component of the workshop is the ability to submit questions either in writing or during a live Q&A call. Working through the components of this workshop will massively cut down on the time you need to spend researching how to prepare your tax return as it is narrowly tailored for its specific audience.

Finally, some tax questions are just too nuanced for the answers to be clearly found for free online. In 2018, I hired a tax firm to validate my overall approach to PhD trainee taxes and research some really gnarly questions. As I learned, there is a lot of gray area when it comes to taxes! The relevant sources are the tax code, the IRS’s translation of the code (e.g., the publications), the court rulings that help interpret the code, and finally, what the IRS actually elects to enforce. If you’d like to benefit from this research (and the benefits may include a literal reduction in your tax liability!), you’re welcome to join my tax workshop for PhD trainees.

How to Read Your PhD Program Offer Letter

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Congratulations on receiving an official offer of admission to a PhD program! This is truly an exhilarating period in your academic career. After celebrating your admission and letting the giddiness wear off, whip out your magnifying glass: It’s time to take a close look at your offer letter to figure out what it actually means. Offer letters can be a bit difficult to decipher (sometimes intentionally!), but this is a vital step so that you go into your PhD program with your eyes wide open regarding your financial situation. This article covers how to discern what your program is offering you regarding your stipend/salary, out-of-pocket tuition and fees, the type of pay you receive and whether it comes with a work requirement, health insurance, “guarantees,” and how your funding package evolves as you move through your PhD program.

PhD offer letter

If your offer letter doesn’t answer all the following questions (and you’re seriously considering taking it), turn to the offering department’s administrative assistant (for official answers) and/or current graduate students (for this-is-how-things-actually-work answers).

Gross Stipend/Salary

Right away your eye might be drawn to a phrase like “Your total financial aid package is worth…” and some huge number like $50,000 or $90,000. Don’t be distracted by it! You need to know what your actual pay will be – what is usually referred to as your stipend. The letter should delineate between your stipend and the cost of the tuition and fees paid on your behalf. The important take-away is what’s going into your pocket (before taxes) as this is the money that will pay your living expenses and fund your financial goals.

Tuition and Fees (Your Responsibility)

If your offer letter includes funding, it should say that some aspect of your tuition and/or fees will be paid on your behalf. However, when determining how much money you actually get to keep at the end of the day, you have to know: Are you responsible for paying any (partial) tuition and fees out of your own pocket? For example, perhaps your tuition is being paid on your behalf, but out of your stipend you are expected to pay a relatively small fee. Don’t be impressed by huge numbers in tuition and fees being paid for you! What matters is how much you have to pay out of your own pocket; ideally $0 or close to it!

Source of Stipend

Your offer letter will likely tell you the source(s) of your stipend: an assistantship or fellowship. One of the key differences between these two types of funding is whether there is a work requirement.

Fellowships do not have “work requirements,” and to maintain them you are generally just expected to make satisfactory progress toward your degree with respect to your coursework and dissertation progress.

Assistantships do have a work requirement; you are technically an employee of your university. Research assistantships with your dissertation advisor usually allow you to combine your work requirement with your dissertation research (with some exceptions). Teaching and graduate assistantships require you to teach or perform some other kind of service for your university (most often officially capped at 20 hours/week), after which you are free to work on your coursework and/or dissertation.

It’s vital to know whether you have a work requirement in your first year or really any requirements to maintain your funding (e.g., attending a seminar series, submitting progress reports). If you don’t meet those requirements, your funding could be revoked.
Your stipend offer letter should clearly state what your work requirement is or whether you need to secure one prior to the start of the school year. For example, you might be offered funding from a teaching assistantship, but it could be still up to you to actually arrange with a professor to TA a certain course.

Knowing about a work requirement will help you properly envision how you’ll spend your time during your first year in your PhD program.

Duration of Stipend

Your offer letter should tell you over what period you will be paid your stipend. Ideally, the answer is 12 months, although carefully note if the source of the stipend changes during that time. (For example, I was paid in my first 9 months of graduate school by a training grant and in the next 3 months by a research assistantship, and this was all spelled out in my offer letter.) If the offer letter says the stipend lasts any period shorter than 12 months, you need to follow up: Does that mean you actually won’t be paid (you’ll have to plan financially for that, obviously) or that you are going to have to secure other funding after the initial period?

Who Pays What for Health Insurance?

Health insurance is a huge issue for graduate students, and universities handle it differently. The key answers you need from your offer letter are:

  • Will you have an opportunity to buy student health insurance through the university? (Almost certainly the answer is yes.)
  • What is the yearly premium for the student health insurance?
  • If you sign up for student health insurance, is the premium paid on your behalf (similar to tuition and fees) or do you pay (part of) it out of pocket?
  • Are dental and vision insurance bundled along with health insurance, or would you have to buy them separately?

Even if you plan to stay on your parents’ insurance for some years at the start of your PhD, it’s important to understand what you may be paying for premiums once you switch to insurance through your university.

Is There a Guarantee?

Does the word ‘guarantee’ appear anywhere in your offer letter, e.g., is your funding guaranteed for 2 years, 5 years? A guarantee is nice to have, but it shouldn’t necessarily be a deal-breaker. If you don’t have guaranteed funding throughout your PhD (which might very well go beyond 5 years!), find out from current students whether students all pretty much stay funded or whether funding becomes tight/competitive in later years.

What Happens after the First Year?

Probably of the most important things to know about funding during your PhD is what happens in later years. A PhD is long, after all, and your offer letters might only discuss funding in the first year. Your offer letter might include hints of funding changes in the future, such as by saying you received a first-year fellowship or one-time bonus, or saying that your funding source will change starting in your second year.

You should be particularly wary of your stipend decreasing after your first year due to a one-time/first year-only bolus of money (a promotional offer, so to speak). It would be quite painful to find out at the last minute that your stipend is going down and have to scramble to adjust your living expenses. Better to build your life and budget around your ongoing stipend amount and use the first-year increase for one-time expenses or savings.

If you are seriously considering accepting an offer, you should definitely inquire about what funding looks like in the second and following years. The departmental administrative assistant may not be able to say for sure what will happen in your case, but he/she and current students can tell you the precedent.

  • What will my after-tuition/fees stipend (and its term) be in my second and subsequent years (lower, higher, pretty much the same)?
  • What will the source of my funding be in later years, and am I responsible for securing it? (For example, in your first year you might be funded from a training grant so you can rotate among potential advisors, but starting in your second year you must secure a research assistantship with your dissertation advisor.)
  • Are yearly cost-of-living raises typical?

Don’t be dazzled by a pumped-up first-year offer if the reality behind it is a department where students compete with one another for limited funding and you’re paid the same stipend in your fifth year that you were in your first!

You can see that to properly understand your funding during your PhD you need a lot more information from your stipend offer letter than just the number that will hit your bank account each month! Again, you only need to investigate beyond the offer letter to the degree that you are considering accepting the offer (most likely based on other factors). But even if you don’t care about money at all, I strongly encourage you to find answers to these questions for the program that you ultimately accept before you commit to a lease or move.

Form 1098-T: Still Causing Trouble for Funded Graduate Students

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Form 1098-T is issued to many (though not all) graduate students and reflects some of their higher education income and expenses. Until this year, the 1098-T was rife with problems for funded graduate students, and in many cases caused more confusion than it clarified. The 1098-T underwent a makeover in 2018, which corrected the worst of these problems. However, the shift could cause funded PhD students to owe a larger-than-expected amount of tax in 2018.

1098-T problems

Further reading: How to Prepare Your Grad Student Tax Return

What Is Form 1098-T?

Form 1098-T is a tax form generated by educational institutions to communicate the education-related expenses and income associated with an individual student. It reflects the transactions in the student’s account (e.g., Bursar’s account) from a given tax year. The form’s primary use is to document the amount of money a student (or the student’s parents) may be able to use toward an education tax benefit.

The 1098-T underwent a makeover for tax year 2018, and it has improved significantly. However, some of the issues with the prior version of the form are still causing problems in 2018. This article outlines those problems and their solutions.

What Does the 1098-T Communicate?

A few of the fields on the 1098-T are most relevant to funded PhD students.

Box 1 Payments Received

This box reflects the amount of money paid on your behalf or by you for tuition and related fees. For example, if your department pays for your tuition, the amount of the tuition will show up in Box 1.

Box 2 Amounts Billed

This box is no longer in use in 2018, but many (most?) universities used it until 2017. Box 2 also reflects tuition and related fees, but it is a sum of the charges billed in the tax year rather than the amounts paid. A bill could be issued in one tax year and not be paid until the subsequent tax year.

Box 5 Scholarships and Grants

This box reflects the scholarships, fellowships, and/or grants received by the student in the tax year. The money that paid your tuition and fees will show up in this box. The fellowship (or other non-compensatory income) that paid your stipend or salary may or may not be included in this box.

Box 7

This box is checked if any bills or payments for a term beginning in January through March of the following tax year were included on the current year’s 1098-T. For example, if your university received payment in December for a term starting in January, this box will be checked.

Box 9

This box is checked if you are a graduate student.

The remainder of this article reviews the problems with the 1098-T and how they can be ameliorated.

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Problem #1: Academic Year and Calendar Year Misalignment

Box 7 concerns the misalignment between the academic year and the calendar year.

Bills and Payments to Your Student Account

Ideally, the bills and payments for a given term will all show up on the 1098-T for the same calendar year in which the term falls.

Each fall term is like that: you may be billed or make a payment a month or two prior to the start of the term, e,g., in August for a term starting in September, but all the charges and scholarships and payments are done in the same calendar year.

However, for spring terms, you may be billed and perhaps make payments at the end of one calendar year for a term beginning in January to March of the next calendar year. In this case, the 1098-T for the earlier tax year is the one that reflects those expenses, and if a tax benefit is in order, it can be taken in the earlier year.

Historical Billing Practices for the 1098-T

In 2017 and prior, this caused a significant though largely unnoticed problem for funded graduate students (or anyone receiving scholarships): A university could post a bill for a spring term in December of the prior year, for example, and not post the scholarship that paid that bill until the start of the term in the later calendar year. That means that the earlier year would have an excess of expenses in Box 2, while the later year would have an excess of income. If not corrected, this could result in a tax deduction or credit in the earlier year and excess taxable income in the later year.

Imagine a typical fully funded graduate student at a university that had its accounting system set up this way and that used Box 2 on the 1098-T. (This was a common scenario.) In the student’s first calendar year, there would be two semesters of expenses billed but only one semester of scholarships posted. If the student used the numbers from the 1098-T without correction, he would be eligible for a tax break in that first year (or his parents would take it if he were a dependent). Each subsequent calendar year would have an equal number of terms of expenses and scholarships posted, which would probably result in small, not very noticeable discrepancies between the expenses and income. However, in the student’s final year, the system would catch up, and there would be scholarships posted with no corresponding expenses, resulting in excess income and excess tax due. In some cases, the extra tax due could exceed the value of the tax break taken in the earlier year. (Not to mention that if the student were a dependent in that first year his parents would have received the tax break, whereas he has to pay the extra tax himself in the last year.)

The correction that should have been performed throughout these years when a scholarship and the expense the scholarship paid showed up on different years’ 1098-Ts is to match up in the same calendar year the expense billed with the scholarship that paid the expense. Typically, that would mean not using an available tax benefit in an earlier year and preferring to use it in the later year that the income came in. When the expense and the scholarship that pays the expense are used in the same calendar year, the scholarship can be made tax-free using the expense if it is qualified. Specifically, you would report the relevant qualified education expenses in the later year rather than the earlier, meaning that the 1098-T in both years would be inaccurate / need adjustment.

What Changed in 2018?

Starting in 2018, Box 2 has been eliminated. This means that all universities now have to report payments received for tuition and related fees in Box 1. If the university switched its reporting system between 2017 and 2018, Box 3 is checked.

This is a much better system going forward for funded graduate students. It means that when a scholarship is posted to the student account to pay for tuition and related fees, that amount will show up in Box 5 and Box 1 in the same year, since they are the same action. It doesn’t matter if that happens in the same calendar year as the term or an earlier calendar year, because they will always be reported together.

However, this change causes two potential problems in 2018 for students at universities that made this switch.

1) If a charge was billed at the end of 2017 for a term stating in the first three months of 2018 and the bill was paid in 2018, the same expense will show up on both the 2017 and 2018 1098-Ts, first in Box 2 and then in Box 1.

Therefore, anyone receiving a 1098-T with Box 3 checked must determine whether one or more of the expenses summed in Box 1 was already used to take an education tax benefit in 2017. If that is the case, the expense cannot be used again in 2018.

2) This change in accounting systems also may force the unbalancing issue I described earlier for students finishing grad school. 2018 could be the year that there is excess income with no expenses available to offset it (after correction). If this happens, the student can either choose to pay the extra tax in 2018 or file amended returns going into the start of grad school when this problem originated (up to 3 years) to match up all the prior scholarships and expenses properly. This would still result in extra tax paid now, though it may be less than if the problem remained unamended.

The good news is that after catching up in 2018 if necessary, starting in 2019 the 1098-T will be much more straightforward.

Problem #2: Qualified Education Expenses Are Incomplete

The tuition and related fees reported on the 1098-T are not quite synonymous with the “qualified education expenses” you use to take an education tax benefit. In fact, there are different definitions of qualified education expenses depending on which benefit you use. Most likely, the amount listed in Box 1 is the amount of qualified education expenses the student has under the most restrictive definition for the Lifetime Learning Credit or the American Opportunity Tax Credit.

The definition of qualified education expenses for the purpose of making scholarship and fellowship income tax-free is more expansive. It includes certain required fees and expenses that were excluded from the definition of QEEs for the other education tax benefits, such as student health fees and required textbooks purchased from a retailer other than the university.

To find these additional qualified education expenses, check your student account, bank account, and saved receipts. Then, net them against your excess scholarship and fellowship income to make the income tax-free.

Problem #3: Not All Students Receive One

When Box 5 of the 1098-T exceeds Box 1 for a given student, the university does not have to generate a 1098-T. Some universities, as a courtesy, generate 1098-Ts for all students regardless of the Box 5 vs. Box 1 balance. This inconsistency generates confusion among graduate students and leads to the information in the student account being ignored.

Conclusion

It is clear that the 1098-T was not designed with funded graduate students in mind. Ideally, the 1098-T would be completely redesigned or a new form would be created to assist graduate students in preparing their tax returns. Until that happens, the 1098-T is not an independently useful document as it must be considered alongside the transactions inside and outside of the student account. The makeover to eliminate Box 2 was an improvement; at least starting in 2018, the 1098-T is no longer grossly misleading.

Weird Tax Situations for Fellowship and Training Grant Recipients

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One of the most puzzling tax scenarios that is common in academia—but almost unheard of outside of it—is fellowship or training grant funding because it is neither a wage nor self-employment income. Fellowships and training grants, which I call “awarded income,” frequently pay the stipends and salaries of graduate students, postdocs, and postbacs. This post explains the weird tax situations for fellowship and training grant recipients and how to address them. I’ll clarify right up front that you do need to incorporate your awarded income into the gross income you report on your tax return, and you almost certainly will end up paying tax on it (unless your total income is very low or you have lots of other deductions/credits).

weird tax fellowship

This article was last updated on 1/17/2025. It is intended for US citizens, permanent residents, and residents for tax purposes. It is not tax, legal, or financial advice.

Further reading/viewing:

I have to define my terms up front here because “fellowship” is used variously inside and outside of academic research, and these weird tax situations don’t always apply. What I’m talking about is when your income from your academic/research role is not reported on a Form W-2 (and you’re not self-employed).

Often, though not always, winning an external or internal fellowship generates this kind of income. The National Science Foundation Graduate Research Fellowship (GRFP) and the Department of Defense National Defense Science and Engineering Graduate Fellowship (NDSEG) are among the most well-known examples of this type of income at the graduate level for STEM fields. Basically, you’re being paid because you won an award, not because you are directly trading work or time for money. This kind of income can also come from training grants, such as the National Institutes of Health Ruth L. Kirschstein Institutional National Research Service Award (T32), and in those cases you might or might not be labeled a fellow by your institution.

If your income is reported on a Form W-2, whether it’s called a fellowship or not, this post doesn’t apply to you!

Personally, over my time in/near academia, I received awarded income on five occasions:

  • I was postbaccalaureate fellow at the NIH for a year between undergrad and grad school, and my income was reported on a 1099-G.
  • I was on a training grant in my first year of grad school, and my income was reported on a 1099-MISC in Box 3.
  • I won an internal fellowship for my second year of grad school, and my income was reported on a 1099-MISC in Box 3.
  • I was paid from my advisor’s discretionary funds in my sixth year of grad school, and my income was reported on a 1099-MISC in Box 3.
  • I was a Christine Mirzayan Science and Technology Policy Fellow at the National Academy of Engineering, and my income was reported on a 1099-MISC in Box 3.

Receiving Unusual Tax Forms

The way to definitively tell that you’re receiving awarded income is that you don’t receive a Form W-2 at tax time for your income, which was likely paid similarly to a regular salary or perhaps in a lump sum per term. Instead, you might see your income reported on some other strange tax form:

  • Form 1098-T
  • Form 1099-MISC
  • Form 1099-NEC
  • Form 1099-G

There are other possible mechanism for this reporting; these are the four most commonly used by universities and funding agencies.

None of these forms was designed for reporting awarded income and none do it very well, but they do get the job done if you know what you’re looking for.

Form 1098-T

Form 1098-T, which is issued to some students depending on your university’s policies, is sort of a clearinghouse form for the sum of your fellowships/scholarships/grants received (in Box 5) and also the sum of the qualified tuition and related expenses that were paid (Box 1) to your student account. Your fellowship income might be lumped in with your scholarships in Box 5, which makes them a little hard to parse, or Box 5 might only include your scholarships (see next section if so).

The good thing about Form 1098-T if it includes your fellowship income is that it does put front and center two of the important numbers you’ll need to work with when you prepare your tax return, the sum of your awarded (fellowship, scholarship, and grant) income (Box 5) and a subset of your Qualified Education Expenses (Box 1). You don’t really need to know what your fellowship income was independent of your additional scholarship/grant income See Weird Tax Situations for Fully Funded Grad Students for more details about working with Form 1098-T.

Form 1099-MISC

Form 1099-MISC is a slightly confusing form to receive for fellowship income.

Any non-academic who hears/sees that you have income reported on a 1099-MISC is going to think you’re self-employed. Self-employment and contractor income used to be reported in Box 7, which no longer exists following the creation of Form 1099-NEC (see next). Fellowship income usually shows up in Box 3, “Other income.” If you are a grad student or postdoc, you are not self-employed; do not pay self-employment tax!

The instructions for the 1099-MISC tell you to (“generally”) report your Box 3 “Other income” in the “Other income” line on your Form 1040 Schedule 1. There is a precise line on which you should do so: Form 1040 Schedule 1 Line 8r, which is labeled “Scholarship and fellowship grants not reported on Form W-2.”

Form 1099-NEC

The IRS resurrected Form 1099-NEC, which stands for “non-employee compensation,” starting in tax year 2020. All self-employment and contractor income is now supposed to be reported in Box 1.

Unfortunately, a minority of funding agencies are also reporting awarded income on Form 1099-NEC Box 1. Similar to Form 1099-MISC, if you are certain that this income is fellowship or training grant income and not self-employment income, you should report it as fellowship income on your tax return. If you erroneously report it as self-employment income, you will pay self-employment tax (15.3%) and exclude yourself from taking a higher education tax break.

Form 1099-G

Form 1099-G is typically used when the funding body is part of the federal government. The awarded income shows up in Box 6, “Taxable grants.”

Further reading:

Receiving No Tax Forms

Going along with the theme of not receiving a Form W-2 at tax time, you might very well not receive any tax form at all! It’s very common for there to be zero communication between the organization that pays the fellowship and the fellowship recipient. Other times, the fellow might receive what I call a “courtesy letter,” which is just a short, informal letter stating the amount of fellowship money paid.

Further reading: What Is a Courtesy Letter?

Fellows who don’t receive tax forms or whose institutions and funding agencies don’t communicate with them at all about their personal taxes may feel completely adrift. They have no idea where to even start with preparing their tax returns. Many pay no taxes at all (if you know someone like that, send them this article!) since it takes a certain level of awareness of your tax responsibility to even wonder if you need to pay income tax. Even those who suspect they need to report and pay tax on their fellowship income might be daunted by the task of figuring out from scratch exactly how to do that.

Further listening: Do I Owe Income Tax on My Fellowship?

But it’s really a simple process to carry out if you know what to do! You should be able to find the amount of fellowship or training grant income you were paid for the whole year from your bank records. If you’re not a student, you just straight report that number in Form 1040 Schedule 1 Line 8r. If you are a student, you have to work with your other scholarships and qualified education expenses a bit before reporting a number for your awarded income; see Weird Tax Situations for Fully Funded Grad Students for more details.

Further reading: Where to Report Your PhD Trainee Income on Your Tax Return

Quarterly Estimated Tax

In my observation, the great majority of awarded income recipients have the responsibility of paying quarterly estimated tax—and many, many, many neglect to do so. If you need one level of awareness to even understand you’re supposed to pay tax on your fellowship income, you need an even higher level of awareness before you follow through on paying quarterly estimated tax. In fact, if the organization providing you the fellowship didn’t mention this, it’s not a water cooler topic around your department, and/or you’ve never been self-employed or close to someone who is self-employed, you almost certainly wouldn’t know to do it.

The basic principle here is that the IRS expects to receive tax payments throughout the year, not just in April when your tax return is due. If you owe enough additional tax at the end of the year (and don’t qualify for an exception), the IRS is going to demand not only your tax payment but late fees and interest as well.

The main system for sending tax in to the IRS is tax withholding on a normal paycheck. If you don’t do that or your withholding isn’t sufficient, you’re supposed to pay estimated tax. Basically, you send in a payment (no forms need to be filed) to the IRS four times per year to make sure you don’t have too much extra tax due when you file your yearly tax return. You should work through the estimated tax worksheet on p. 8 of Form 1040-ES to figure out if you are required to pay quarterly estimated tax and in what amount; you can also find the instructions for filing it in that form.

Further reading: The Complete Guide to Quarterly Estimated Tax for Fellowship Recipients

Taxable Compensation and Earned Income Tax Breaks

Some of the tax breaks the IRS offers are contingent on the type of income you have, and fellowship income (not reported on From W-2) does not necessarily qualify.

Individual Retirement Arrangement

To contribute to an Individual Retirement Arrangement (IRA), you (or your spouse) must have “taxable compensation.”

Through 2019, the definition of “taxable compensation” did not include fellowship and training grant income not reported on Form W-2. However, starting in 2020, the definition of “taxable compensation” changed for graduate students and postdocs to include fellowship and training grant income even if not reported on From W-2.

Therefore, all types of graduate student and postdoc taxable income, whether reported on a Form W-2 or not, is eligible to be contributed to an IRA starting in 2020.

Further reading:

Earned Income Tax Credit

The Earned Income Tax Credit (EITC) or Earned Income Credit (EIC) is a credit extended to low-income individuals and families. If your household income is quite low and/or you have one or more children, you might be able to receive the credit. As the name implies, you need “earned income” to qualify for the EITC. Unfortunately, fellowship/scholarship income is not considered “earned income” (Publication 596 p. 18). Puzzlingly, having zero earned income disqualifies you from the credit, but having too much non-earned income also disqualifies you from the credit. The definition of earned income also plays into the calculations for the Child Tax Credit and Additional Child Tax Credit.

Dependent Status

When you are trying to determine if you should file a tax return as an independent adult vs. a dependent of your parents, it is more difficult to qualify as independent with fellowship income rather than an equal amount of W-2 income. (This only applies to students under age 24.) While education expenses count as part of the amount of money that goes toward your “support,” scholarships and fellowships that you won do not count as you providing your own support.

Kiddie Tax

Fellowship income counts as unearned income for the purposes of being subject to the Kiddie Tax. If you are under the age of 24 on December 31 and a student, your “unearned” income exceeding $2,500 may be subject to a higher tax rate than the ordinary rate.

Further reading: Fellowship Income Can Trigger the Kiddie Tax